rs33337049 SNP Detail

Summary

• ID
  rs33337049
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89731674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG AGAAACCCTG TCTCGAAAAA
  R
  AAAAAACAAA ACAAACAAAC AAACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46263642	mCV24089557	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss145494933	ENSMUSSNP5127973	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33337049					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89731674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20796	CpG island 20796	1388 bp proximal
Gm56831	predicted gene, 56831	736 bp downstream
Rr1386	regulatory region 1386	349 bp distal
Rr366841	regulatory region 366841	within coordinates
Rr406251	regulatory region 406251	773 bp proximal
Tssr78676	transcription start site region 78676	1183 bp downstream
Tssr82368	transcription start site region 82368	1566 bp downstream
Tssr82369	transcription start site region 82369	1594 bp downstream
Tssr82370	transcription start site region 82370	1613 bp downstream
Tssr82371	transcription start site region 82371	1625 bp downstream
Tssr82372	transcription start site region 82372	1651 bp downstream