rs33338034 SNP Detail

Summary

• ID
  rs33338034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48046395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA AAGAAAAGGG CAGGAGGCAG
  R
  GAGAAAAGAA GGTGGTGGGA GAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39523506	mCV24600882	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss145709102	ENSMUSSNP2635730	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss325406583	CHEV_17_47872419	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33338034					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48046395 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9270	CpG island 9270	1417 bp proximal
Pgc	progastricsin (pepsinogen C)	992 bp downstream
Rr405329	regulatory region 405329	1345 bp upstream
Rr528107	regulatory region 528107	1070 bp proximal
Rr528108	regulatory region 528108	1518 bp proximal
Rr528109	regulatory region 528109	1552 bp proximal
Rr528110	regulatory region 528110	1968 bp proximal
Tfeb	transcription factor EB	1567 bp upstream
Tssr145035	transcription start site region 145035	1715 bp downstream
Tssr145036	transcription start site region 145036	1686 bp downstream
Tssr145037	transcription start site region 145037	1659 bp downstream
Tssr145038	transcription start site region 145038	1640 bp downstream
Tssr145039	transcription start site region 145039	1269 bp downstream
Tssr145040	transcription start site region 145040	1235 bp downstream
Tssr145041	transcription start site region 145041	1223 bp downstream
Tssr145042	transcription start site region 145042	1172 bp downstream
Tssr145043	transcription start site region 145043	1146 bp downstream
Tssr145044	transcription start site region 145044	1133 bp downstream
Tssr145045	transcription start site region 145045	1116 bp downstream
Tssr145046	transcription start site region 145046	1065 bp downstream
Tssr145047	transcription start site region 145047	1049 bp downstream
Tssr145048	transcription start site region 145048	1029 bp downstream
Tssr145049	transcription start site region 145049	1566 bp upstream
Tssr145050	transcription start site region 145050	1655 bp upstream
Tssr145051	transcription start site region 145051	1704 bp upstream
Tssr148478	transcription start site region 148478	1660 bp upstream
Tssr148479	transcription start site region 148479	1608 bp upstream
Tssr148480	transcription start site region 148480	1142 bp upstream
Tssr148481	transcription start site region 148481	1106 bp upstream
Tssr148482	transcription start site region 148482	989 bp upstream