rs33338099 SNP Detail

Summary

• ID
  rs33338099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:83081505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTACTGTTC ATTTAATTTC CTTTAACACT TTAAAATGTT
  ATGTGAAGGC TCTGACTTGT CAAAACTGAG CCATCCATTT CAGGCATAAC CCATCAAAAT
  R
  ACAACACGAA CAGTTCTCAT AATCTACAAC AGTGAAAAAG GCAGACCCAA TGCTTTAAAA
  GAGAGAGTTT GTCCACACCA ACTACTCTGC ACTATCATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46263270	mCV24054945	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		A
ss51971189	NES14983402	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	A	G	A		G	A	A	G		A
ss145303296	ENSMUSSNP4112055	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss322735753	CHEV_8_84878775	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33338099					SNP	A	A	A	A	A	A	A	G	G	A	G	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971189	NES14983402	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83081505 () rs orientation: forward

Symbol	Name	Function Class
Il15	interleukin 15	within coordinates
Tssr81943	transcription start site region 81943	1454 bp upstream
Tssr81944	transcription start site region 81944	1396 bp upstream
Tssr81945	transcription start site region 81945	1345 bp upstream
Tssr81946	transcription start site region 81946	1292 bp upstream
Tssr81947	transcription start site region 81947	529 bp upstream
Tssr81948	transcription start site region 81948	1289 bp downstream