rs33338636 SNP Detail

Summary

• ID
  rs33338636
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:131994126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAAACAGGAG GATTCCAATG GTAGGGGTTT TCAAAATGGA GACATATTTA AAGTTGTCGA
  CTTGGGACAG TGGTCTGGCT CTTCGGGTAA AAGCACTTGC TACCAGACCG GATGGTCTGA
  ATTTGATCCC TCTGATACCG ACATGGTGAA AGAAAAAGTC AACTCTTCCT GCAAGCTGCT
  CTCTGACCTT TCATCTCTGG GCTACAGCAC AAGTTTCCCC AATACAAACA GCTACAATAA
  TAAATAGATA GATAGATAGA TAGATAGATA GATAGATAGA TAGATAGATA GATAGATAAT
  M
  AAAAATACAT AGTCAACATC CACTATCACT TCACATGAAT CCAATCTATC CCTATCCCTA
  TTCCTATATA TGAAATACAC TTCCAACTGA GTGTGCTACA TGGGCATTTT TTTTTTTTTT
  TACATAAAAC GTCACAGGAT CCCAAACACA ATATTCCCCT TAAAAGAAGA TAACAACAAA
  CAGGGAATCA GATCCATATT CTTTTTAGAA ATTCAGAGAT TCTTTCTAGC ACTATTACTG
  CTGTCTACCC AAAAAAAAAA AAAAAAATGG ATCTAAGAAC TTTTGTCACA CAAAACAAAC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45766798	mCV22284358	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33338636					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:131994126 () rs orientation: forward

Symbol	Name	Function Class
Auts2	autism susceptibility candidate 2	within coordinates
Gm42439	predicted gene 42439	280 bp downstream
Tssr53573	transcription start site region 53573	1375 bp upstream
Tssr53574	transcription start site region 53574	556 bp upstream
Tssr53575	transcription start site region 53575	802 bp downstream