rs33338778 SNP Detail

Summary

• ID
  rs33338778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25236414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAGTATCT TGTCTTTAAG CCTACTTGTT AGTATGACTC
  CTTGGGCATA ATGAATTTGA CCTGCTTTCC TAAGAGTTGG CATGATGGAG GCACTCACCT
  Y
  TGAAAATAAT TGAATATAAA AATACTCAGT ATAAAAATGA GGATCAGTTG ACTGGAAAAA
  GTGAAATTGG CCTTTTCTTG TTTTATGGCC TACATACTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39523690	mCV25256971	ABI	CRAMUS_MOUSE	f	SNP	C	T					C
ss48356868	NES12235500	PERLEGEN	MM_PANEL2	f	SNP		T	C	C	C	C		C	C	C	C	C	C	C	T
ss145372956	ENSMUSSNP1565799	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33338778					SNP	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48356868	NES12235500	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25236414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8752	CpG island 8752	417 bp distal
Cramp1	cramped chromatin regulator 1	1652 bp upstream
Ift140	intraflagellar transport 140	within coordinates
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	1379 bp downstream
Tssr143119	transcription start site region 143119	1316 bp downstream
Tssr143120	transcription start site region 143120	1017 bp downstream
Tssr143121	transcription start site region 143121	861 bp downstream
Tssr143122	transcription start site region 143122	852 bp downstream
Tssr146805	transcription start site region 146805	1737 bp upstream
Tssr146806	transcription start site region 146806	1722 bp upstream
Tssr146807	transcription start site region 146807	1687 bp upstream
Tssr146808	transcription start site region 146808	1649 bp upstream
Tssr146809	transcription start site region 146809	1619 bp upstream