rs33339130 SNP Detail

Summary

• ID
  rs33339130
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147019611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG ACGAAAGAAA AAGGTTGAAT
  R
  CCATCAACCT TTTCATCACA CTCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45266338	mCV22638139	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss147881205	ENSMUSSNP2148131	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320548161	CHEV_2_147003427	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs33339130					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147019611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	602 bp proximal
Cpgi12377	CpG island 12377	951 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates
Rr566759	regulatory region 566759	within coordinates
Rr566760	regulatory region 566760	183 bp proximal
Rr566761	regulatory region 566761	577 bp proximal
Rr566762	regulatory region 566762	1265 bp proximal