rs33339182 SNP Detail

Summary

• ID
  rs33339182
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47747056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCGGGCGGT GGTGGCACAA GCCTTTAATC CCAGCACTCC
  TGTCTCGGAA AAACAAAAAA ACAACAACAA CAACAACAAC AACAACAACA ACAACAACAA
  M
  AAAAAAAAAA AAAGGAAAAA AAATGTGCAG AAATTTCTTA ACTCTACCTG GCCTCTAACT
  TCCTGTGTAT TCATCATTTG TATTCATCGA AGTCTCCCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39523792	mCV25219320	ABI	CRAMUS_MOUSE	f	SNP		C	A	C
ss145706726	ENSMUSSNP1105071	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33339182					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47747056 () rs orientation: forward

Symbol	Name	Function Class
AI661453	expressed sequence AI661453	508 bp upstream
Cimip3	ciliary microtubule inner protein 3	within coordinates
Cpgi9259	CpG island 9259	63 bp proximal
Rr339933	regulatory region 339933	144 bp proximal
Tssr144911	transcription start site region 144911	454 bp upstream
Tssr144912	transcription start site region 144912	470 bp upstream
Tssr144913	transcription start site region 144913	485 bp upstream
Tssr144914	transcription start site region 144914	516 bp upstream
Tssr144915	transcription start site region 144915	600 bp upstream
Tssr148437	transcription start site region 148437	1089 bp downstream
Tssr148438	transcription start site region 148438	1234 bp downstream