rs33339228 SNP Detail

Summary

• ID
  rs33339228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:74076596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAATTTG ACAGATTCAG
  CAATATCGTG ATTCTGGATG TAGATCTTTC ATTCTTCATA GTCTCAAAAT CTAATCACTG
  ATGGACCAAG TTTTTTAAAA AAAAATGTAC TATGCTATGA TACTTCAAGA TCAAAGCCCA
  AAGTGTGTTC ATTTGAGATT TAGTTTTATT TTGCGCTCTG CTCTCTTCCT TCCAGGACCC
  Y
  GTGTGTTTTT GCAGATTATG ATGCAGCTTT TCCCTGTTTT CTCCAAGAGG AAGACAAATA
  GGTTTGGTCT GTAATGAAAG TAGAGTTCAT TTTTATCTGA TAAACCCCAA GGAATGCCTG
  GTGGGAGCAC TTCAGATCAG GTTTGTTTAT AGAGCCCTCA GAGACAAAAT CTCTTACACT
  GAGCAACATC TGGCACAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48300704	NES12220064	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33339228					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48300704	NES12220064	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:74076596 () rs orientation: forward

Symbol	Name	Function Class
Robo2	roundabout guidance receptor 2	within coordinates
Tssr141729	transcription start site region 141729	502 bp upstream
Tssr141730	transcription start site region 141730	355 bp upstream
Tssr141731	transcription start site region 141731	254 bp upstream
Tssr141732	transcription start site region 141732	238 bp upstream
Tssr141733	transcription start site region 141733	65 bp upstream
Tssr141734	transcription start site region 141734	29 bp downstream