rs33339230 SNP Detail

Summary

• ID
  rs33339230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:74074471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTTAGGC CTATGGCTGT
  GTCCCTGAAC AATTAAGAGT CTGCTCAGTT TATGGCTCTC AGCTGGACTA GCCAGTGGCA
  CAACAGGTCA AAGTGTACAT TGAAAAAGCC AACCTGTTCT TCTACTAAGT TTAATTGAAC
  TACTATGGCA TTTCTAGATT AGGTAAAATG ATATACTCAA AGCACAAGCT TGACACACAG
  Y
  ACATCATGAG TATGTGGACC TAGCATTAAA GCATTTTATC ACAAAAAAAA AATGAGAAAA
  AAAATTCTCA GTATGTGTAA CTGAAAGGCA AGGTTATCAG CTTTGTGTAA TTCTATGTCT
  GTATTTTGAC TTTCTGTTTA TAACATTTGA GTATATCCAA GGTCGTCTAC CAATAACTCT
  GCACTGACGC CTTTGAGTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48300708	NES12220141	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33339230					SNP	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48300708	NES12220141	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:74074471 () rs orientation: forward

Symbol	Name	Function Class
Robo2	roundabout guidance receptor 2	within coordinates
Tssr141729	transcription start site region 141729	1612 bp downstream
Tssr141730	transcription start site region 141730	1731 bp downstream
Tssr141731	transcription start site region 141731	1832 bp downstream
Tssr141732	transcription start site region 141732	1873 bp downstream