rs33339829 SNP Detail

Summary

• ID
  rs33339829
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110549587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAGAAAG ACTTCATGCA
  CTTGCCATTT AATATGCTCT TTTATCTAAT TTTAAAGAAC TCTTTAAAAT GGTGTATTAT
  ATGGACTAAA TAAAGAACAT GTGAATTTTA TCGCTCTATG AAACTAAATT TAGCCATGGC
  GTTGGGCAGT CTGGTTCCGA CTCGCTGTTA CTGTCAGGTC AGGGACCAGC CACTCCAGGG
  R
  CACTGGCTTG AGGTGGGAAG CAGGTGTCTG CCCTGTGTCC CCCTAATGAG CATCAGCTGT
  GCGTTAGCTC CTGGTCTAGG TCCTTCTCAG AAGCCGATCC TGAAAGCCAC CATACGACCT
  CAGGCGTGGA GATACGCAGT TTTGATCTCA GCACTCGGAA GGCAGAGGCA GGCAGAGCTC
  TGTGAGTTCG AGGCCAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38932579	mCV24942963	ABI	CRAMUS_MOUSE	f	SNP		G	A					G	G
ss47286387	NES11409626	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	A		G	G	A		A	A	G	A		G
ss138691855	ENSMUSSNP1161680	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss324158339	CHEV_12_111821363	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33339829					SNP	G	G	A	A	G	G	A	G	G	G	A	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47286387	NES11409626	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110549587 () rs orientation: forward

Symbol	Name	Function Class
Ppp2r5c	protein phosphatase 2, regulatory subunit B', gamma	91 bp downstream
Rr387783	regulatory region 387783	within coordinates