rs33339850 SNP Detail

Summary

• ID
  rs33339850
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7191502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGATTTGC TGATGGATTG
  GATGTGAGAT AGTACGAAAA AAAAAAAAAA ACAAGAATGG CCAAGGTTTG TGTCCTAAGT
  AACTGGGAGT TGCAAAAACC AAGTGGATTC AGGGAAGGAG GAGGTCAGAC TTTGGTTTTC
  TTTAACCGTT TGTCACCCAC CATGAAATGG GTAAAAGAGC AAGGAGAGAA CAGGAAAGAG
  Y
  GGGGCCATAA AACATTCCAG GAGAAACTCA AATTCTAAAA GAAAAGTCAA CCAATACTAT
  GGTCCACATG GCACAGATGT TGAAACGATA ATTCAAAGGA TTTTGAACTG CTCTATGGGA
  AAAAAATGCT TCAAACTGAT ATCACAAATA GGCTCAAATG AATAAAAGTG GAAATTCTTA
  GCAAATGAAT AAATTATCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46801828	NES11002825	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33339850					SNP	T	T	T	T	T	T	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46801828	NES11002825	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7191502 () rs orientation: forward

Symbol	Name	Function Class
DXImx32	DNA segment, Chr X, Immunex 32	496 bp proximal
Rr4534	regulatory region 4534	99 bp proximal
Rr10750	regulatory region 10750	198 bp proximal