rs33340778 SNP Detail

Summary

• ID
  rs33340778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7193628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCGGGTT TCTACTGTTA
  CTATTGTTTG TTTCTTTGTA GATGGGTTAT CACTTTATAG ATGGGCTAGC TGGCCTCAAA
  CTCACAATGC TCCTCCTGCC TCAGCATCTC CGGTTTCAAT ATTAGAAGTG TGCACTAAAG
  TCTTTGAAAC ACAAGACAGG TACCTGTCAG AATCTTGATA ATAACTGAAT GTAAACGAGT
  R
  GATAAAATAT TCTGTGCCAA AGAAAGACAG GGGCTTAAGG GACGAAAAGA GGGGAGAGCG
  GATCTGAAAG CCGACGTGAA AGACTCTGAC TCTGGGATTC TTGATAAATC CTGGTCTGAG
  TTGGATCAAG AAGATAAGCA AACTAGAAAA GGAGTCAAGT GGGTTCTGAT TGTGGCTTTG
  GGCTCTCTTT CCATCTGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46801837	NES11002728	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33340778					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46801837	NES11002728	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7193628 () rs orientation: forward

Symbol	Name	Function Class
DXImx32	DNA segment, Chr X, Immunex 32	1497 bp distal
Rr4534	regulatory region 4534	1628 bp distal
Rr10750	regulatory region 10750	1599 bp distal