rs33341352 SNP Detail

Summary

• ID
  rs33341352
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24035848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAC CTCAGAGGAA AAGCAGATCA
  R
  TATCTCCTTG CCCCAAGGTA GACTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39524453	mCV22837874	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss145333367	ENSMUSSNP3205611	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss325327509	CHEV_17_23953841	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33341352					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24035848 () rs orientation: forward

Symbol	Name	Function Class
Rr340683	regulatory region 340683	448 bp distal
Rr340684	regulatory region 340684	1753 bp proximal
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142965	transcription start site region 142965	1683 bp downstream
Tssr142966	transcription start site region 142966	1636 bp downstream
Tssr142967	transcription start site region 142967	1590 bp downstream
Tssr142968	transcription start site region 142968	1569 bp downstream
Tssr142969	transcription start site region 142969	807 bp downstream
Tssr142970	transcription start site region 142970	773 bp downstream
Tssr142971	transcription start site region 142971	704 bp downstream
Tssr142972	transcription start site region 142972	666 bp downstream
Tssr142973	transcription start site region 142973	643 bp downstream
Tssr142974	transcription start site region 142974	605 bp downstream
Tssr142975	transcription start site region 142975	585 bp downstream
Tssr142976	transcription start site region 142976	556 bp downstream
Tssr142977	transcription start site region 142977	499 bp downstream
Tssr142978	transcription start site region 142978	457 bp downstream
Tssr146670	transcription start site region 146670	1604 bp upstream