rs33341394 SNP Detail

Summary

• ID
  rs33341394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7280686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGGGTGG CCTCAAACTC
  AAAGGACCTG CTGCCTCTGC TTCCTGAGTA CTGGGATTAA AGGTGTGCAC CACCATACTG
  GACTGAACAC TAGATCTTTT CATACAAACA ATGCTCTCTC ATTTACACGA GAGTCTCTCT
  TTTGACCTGC AGCCTCTGAT TTTCTCCAGA TTTAAATCTT GATCTCATTG AAAGTCACTT
  R
  TAGACAGACA ATCCTTTCCC ACCAGATATA TGGACATTCT AGGGCAGCAA AAAGATTTCC
  TAGGGGAAAA TGTCCTAGAG GAACTGCCCC AGCAGAATCT ACCTAAAAAT TCCTCAGACG
  TTATTTCTTC TCCCAAGGAT TCCTTTCCCA TCTCCCCTCT TCTTCACTGT CCACATCATT
  TCTCCAACAG CCTGGCTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46802122	NES11004288	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33341394					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802122	NES11004288	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7280686 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	within coordinates
Rr689600	regulatory region 689600	880 bp proximal
Rr689601	regulatory region 689601	1858 bp proximal
Tssr5584	transcription start site region 5584	1700 bp upstream
Tssr162781	transcription start site region 162781	1706 bp upstream
Tssr162782	transcription start site region 162782	1675 bp upstream
Tssr162783	transcription start site region 162783	1659 bp upstream