rs33341806 SNP Detail

Summary

• ID
  rs33341806
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7290758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAGGGA GGACAGGGGT
  GAGAGAGAGA CAAGAAAGTA AGGATTAGAG CAGTCAGAAT CCATATATAT AAACATATAT
  GACATTATTA CAGAACAAAC TTAATTTATA AAAAACATTA AAAACACCCA CATAAAATTA
  ACCTAAGAAA ATCAAAGATA CAGATTTTAC TTCTTGGTGC CTAAATATCA AGTAATTTTT
  W
  AAAAACCAAT CCTAGAAAAC TGTTTTTTGT TTGTTTGTTT GTTTGTTTGT TTGTTTTAAT
  TAGCAACAAA TGGTTAGCAG TGAATGTAAT TGTCTGACTC TATGATTACT ACTCAGAAAA
  GTTAAATAAC TCATGTACTT TAAAAAAGAA ATTGAAAGGG AAAAGGATGG ACCTGGACAT
  TGTTTTGTTA AGTGAGGTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46802224	NES11003810	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33341806					SNP	T	T	T	T	T	T	A	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802224	NES11003810	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7290758 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	1531 bp upstream
Cpgi22567	CpG island 22567	1639 bp distal
DXImx8	DNA segment, Chr X, Immunex 8	290 bp proximal
Rr689605	regulatory region 689605	1350 bp distal
Rr689606	regulatory region 689606	1501 bp distal
Rr689607	regulatory region 689607	1215 bp distal
Rr689608	regulatory region 689608	1211 bp distal
Tssr162787	transcription start site region 162787	1578 bp upstream
Tssr162788	transcription start site region 162788	1545 bp upstream
Tssr162789	transcription start site region 162789	1523 bp upstream