rs33342112 SNP Detail

Summary

• ID
  rs33342112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:68516608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCA ATACAGTATC CTTCCCTTAA
  Y
  TTGAGCCACG AGCCAAGTTA TTATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46264418	mCV22628451	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss145062381	ENSMUSSNP1317738	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss322687928	CHEV_8_70587855	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33342112					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:68516608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20399	CpG island 20399	856 bp distal
Psd3	pleckstrin and Sec7 domain containing 3	within coordinates
Rr664367	regulatory region 664367	1740 bp distal
Rr664368	regulatory region 664368	1239 bp distal
Tssr81475	transcription start site region 81475	1612 bp upstream
Tssr81476	transcription start site region 81476	1452 bp upstream