rs33342430 SNP Detail

Summary

• ID
  rs33342430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115104889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACT TGAGTCCCTG CCATGCGTGC
  R
  TGCGTGGTTC GTGTATGGTG CGTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45767894	mCV24915802	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss149119760	ENSMUSSNP2860997	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G		G
ss321653981	CHEV_5_115416839	CHEVERUD	SCREENING_POP	f	SNP					G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33342430					SNP	G	G	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115104889 () rs orientation: forward

Symbol	Name	Function Class
Gm71622	predicted gene, 71622	within coordinates
Hnf1a	HNF1 homeobox A	within coordinates
Hnf1aos1	HNF1 homeobox A, opposite strand 1	1913 bp upstream
Hnf1aos2	HNF1 homeobox A, opposite strand 2	1993 bp upstream
Rr124128	regulatory region 124128	1111 bp proximal
Rr618076	regulatory region 618076	800 bp distal
Rr618077	regulatory region 618077	1264 bp distal
Rr618078	regulatory region 618078	222 bp distal
Rr618079	regulatory region 618079	86 bp distal
Rr618080	regulatory region 618080	722 bp proximal
Rr618081	regulatory region 618081	1503 bp proximal
Tssr48194	transcription start site region 48194	1929 bp upstream
Tssr48195	transcription start site region 48195	1959 bp upstream
Tssr48196	transcription start site region 48196	1998 bp upstream