rs33342576 SNP Detail

Summary

• ID
  rs33342576
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110551211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTAACATG AAACATAAAA
  ATCACCAGAA ATTCCACTCC CAGTTAAATG TTTGTTAGAG ATGATTCGTT GGGAGAGAAA
  TGGGTTCCAC TACCAGAAAG CTGAAATTCA CCCTTCAGTT AACATTGGCT TCTTTGCAAG
  GGGGGTGGGG GGGTGTTTTG AGGTTTGGCT TAAGAAGGAC GCATTGTAAG GAGAGAGAGA
  R
  GTTGGCCTAC ACCAGGGAAG CTACATACCC TTCCCTGCCT CAGCCCACTG TCTCCTTCAT
  GGCTTTTTGC AAACAACAGC ATTATGTTTT TAGGGATTTT ATTGTGGTTT GATTTTGAGA
  CAGGGTCTTG CTCTGTGGCT TAGGCTGTTC TGAACTCACT ACATAGCCCA GACTGGCTTC
  AGACATGCAG CAGTCCTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47286417	NES11409548	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G		G	A	G	G		G
ss324158348	CHEV_12_111822987	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33342576					SNP	G	G	A	G	G	G	G	G	G	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47286417	NES11409548	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110551211 () rs orientation: forward

Symbol	Name	Function Class
Ppp2r5c	protein phosphatase 2, regulatory subunit B', gamma	1715 bp downstream
Rr387783	regulatory region 387783	94 bp downstream