rs33342588 SNP Detail

Summary

• ID
  rs33342588
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26497462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCAAGGGGA TGCCTGGGAG CCGGGTGTGG GGAATGTTTG
  CACAGGGAGT AGACAGGGAA CCAGAGGTTG AGCCCAGCCC ATCTGTCCCC TTTCCCTACA
  R
  AATACTCCCC AGGACCTGGT GAGGCACTTT CTTCTTTGCA TTTCTTCTGG GGAATAGGGG
  GAGGAAAGTG ATATAAGGAT GAAGAGCTCT GTACTTCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45266581	mCV25294220	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss146386107	ENSMUSSNP2857304	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs33342588					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26497462 () rs orientation: forward

Symbol	Name	Function Class
Gm20532	predicted gene 20532	within coordinates
Gm39772	predicted gene, 39772	within coordinates
Rr42175	regulatory region 42175	1662 bp distal
Rr42176	regulatory region 42176	62 bp distal
Rr48585	regulatory region 48585	1539 bp proximal
Tssr23142	transcription start site region 23142	364 bp downstream
Tssr23143	transcription start site region 23143	535 bp downstream
Tssr23144	transcription start site region 23144	616 bp downstream
Tssr23145	transcription start site region 23145	702 bp downstream
Tssr23146	transcription start site region 23146	722 bp downstream
Tssr23147	transcription start site region 23147	804 bp downstream
Tssr23148	transcription start site region 23148	1169 bp downstream
Tssr23149	transcription start site region 23149	1220 bp downstream