rs33342589 SNP Detail

Summary

• ID
  rs33342589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181504959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTGAAGCT CCTTTTTCTG TGATAACTCC AGCTGTGTCA
  GGTTGACACA AAACTAGCCA TAAATATTTG GCTTACATGT CAAGAGTCCA TTGTTTAGGG
  R
  AGTCAATGCA GGAACTTGCT GCAGAAACAG AAGCCATTAC CATGGTGGGA TGCTGCTTAC
  TGGTTTGCTC CTCATGATTT ACTCAGATTC TCAGATTGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45266582	mCV23057210	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss148404632	ENSMUSSNP189763	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33342589					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181504959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12941	CpG island 12941	795 bp proximal
Gm57457	predicted gene, 57457	within coordinates
Polr3k	polymerase (RNA) III (DNA directed) polypeptide K	1194 bp upstream
Rr56343	regulatory region 56343	242 bp proximal
Rr397596	regulatory region 397596	1001 bp upstream
Tssr22352	transcription start site region 22352	1252 bp upstream
Tssr22353	transcription start site region 22353	1276 bp upstream
Tssr28245	transcription start site region 28245	1032 bp downstream