rs33342949 SNP Detail

Summary

• ID
  rs33342949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71151276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCT AGAGGGAAGT AAAGAGGGGA
  R
  GAAGAGAAAG GGAGGAGAGG CAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46263857	mCV22788505	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss145129782	ENSMUSSNP3585186	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss322701108	CHEV_8_73222525	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33342949					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71151276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20486	CpG island 20486	1615 bp distal
Gm11175	predicted gene 11175	535 bp downstream
Gm64347	predicted gene, 64347	within coordinates
Gm64349	predicted gene, 64349	within coordinates
Jund	jun D proto-oncogene	323 bp upstream
Rr368549	regulatory region 368549	221 bp downstream
Rr368550	regulatory region 368550	33 bp upstream
Rr400911	regulatory region 400911	1975 bp upstream
Rr664888	regulatory region 664888	1624 bp distal
Rr664889	regulatory region 664889	123 bp distal
Rr664890	regulatory region 664890	within coordinates
Rr664891	regulatory region 664891	32 bp proximal
Rr664892	regulatory region 664892	177 bp proximal
Rr664893	regulatory region 664893	1052 bp proximal
Tssr77799	transcription start site region 77799	81 bp downstream
Tssr77800	transcription start site region 77800	305 bp upstream
Tssr81647	transcription start site region 81647	299 bp upstream
Tssr81648	transcription start site region 81648	262 bp upstream