rs33343175 SNP Detail

Summary

• ID
  rs33343175
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7277612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTTCTG ATCATTTATA
  ATGTGCCTCC CATTATAATA GAGGCTAGAA AGCCAAAGGC TCTATTACTT CTCTGAAAGA
  AGAAAATGTA TGTAATTTAG GTTCTGCTAA TCAGATATAC TCATGTGAAA ATTACCTTTC
  AAAATGCAGT CAAGTAGGGA GAAACGTGGC GATAGGAGTG CCTTCCATCT TGCCACTGTG
  K
  TTCTGAGACA ACAGATGCAA CGGAGCCGGT TCCCACCACT CTGTAGCACA GCCGAGAGAG
  AACGCTTCTC AAACCAAAAG CTGCCGCAGA AGATCCCTAA TCTCGGGTTT AGGTTTAGAT
  TATTTGATCC TGCACACAGC TGTCAGGAGA GAAACGTCCT GCTTCCCAGT GGTGGCAGAA
  GTGTCCTCCT GCTGTGACCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46802095	NES11004384	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33343175					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802095	NES11004384	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7277612 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	444 bp downstream
Tssr5584	transcription start site region 5584	1371 bp downstream
Tssr162781	transcription start site region 162781	1361 bp downstream
Tssr162782	transcription start site region 162782	1383 bp downstream
Tssr162783	transcription start site region 162783	1401 bp downstream