rs33343181 SNP Detail

Summary

• ID
  rs33343181
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7278123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTGCTAT ATGCAACTGA
  AATTTGATTT ATGTGCTAAT CAAAATCAAG TCCTTATAGA CACCAATATA GTCTCCCTTC
  CAACAACTCG CTCTTACTTT GAAGAACACT CAATAATGAA CACATATACT TTTGCATGAC
  CCACAAACCA TAGATGAAAG AAGTTTATTC TGTGCTAATG GAGAAACTCC TTTCTCTGGG
  Y
  AATTTGAGTC CCTACTCTCA ATAAAGTTTG CTTTTAATTA TACATAGCAT CTTTCATATC
  AGAATAAAAA CAATCTAGAA AAAAAAACCC TCACTATTCT TTGCTTAACA CCCAAGTATT
  AGGTCTAAAA GAAGGAAAGA GTGAAGGGAA CAAATAAAAT GTATAGATTA TTTTTAGAAA
  GACACTGAAA GAACAAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss46802104	NES11004388	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	T		C	C		C
ss325887791	CHEV_X_6989010	CHEVERUD	SCREENING_POP	f	SNP										T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs33343181					SNP	T	T	C	T	T	T	C	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802104	NES11004388	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7278123 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	within coordinates
Tssr5584	transcription start site region 5584	860 bp downstream
Tssr162781	transcription start site region 162781	850 bp downstream
Tssr162782	transcription start site region 162782	872 bp downstream
Tssr162783	transcription start site region 162783	890 bp downstream