rs33343352 SNP Detail

Summary

• ID
  rs33343352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124142139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACC TCAAAGGTCA CCTCAAAGGT
  Y
  CCATCTCAGA AGTCAGCCCA CCCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45767910	mCV23283977	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss149200761	ENSMUSSNP404629	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss321672186	CHEV_5_124454085	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33343352					SNP	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124142139 () rs orientation: forward

Symbol	Name	Function Class
Gm37939	predicted gene, 37939	572 bp upstream
Hip1r	huntingtin interacting protein 1 related	876 bp downstream
Tssr48832	transcription start site region 48832	912 bp upstream
Tssr53284	transcription start site region 53284	1541 bp downstream
Vps37b	vacuolar protein sorting 37B	565 bp downstream