rs33343556 SNP Detail

Summary

• ID
  rs33343556
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148991108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAT GTCCCCCATT TTTTTTTTTT
  W
  AAATCCTGGC TCCTATACAC TTCTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45767433	mCV25205428	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A	A
ss144700036	ENSMUSSNP4784441	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		A
ss321720090	CHEV_5_149865874	CHEVERUD	SCREENING_POP	f	SNP						T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33343556					SNP	A	A	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148991108 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17090	CpG island 17090	639 bp distal
D5Mit287	DNA segment, Chr 5, Massachusetts Institute of Technology 287	291 bp distal
Hmgb1	high mobility group box 1	1241 bp upstream
Rr124812	regulatory region 124812	107 bp distal
Rr399531	regulatory region 399531	987 bp downstream
Tssr1757	transcription start site region 1757	1068 bp downstream
Tssr49872	transcription start site region 49872	1089 bp downstream
Tssr54620	transcription start site region 54620	1245 bp upstream
Tssr54621	transcription start site region 54621	1227 bp upstream