rs33343826 SNP Detail

Summary

• ID
  rs33343826
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102491501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAGGTTA GGAAATGATT
  GTCAAAGGAA CTTGTATTTA AGAGATGAAA GAATTGGAAA AAAAAATCTA AAAACCGGAA
  ACAAATGTAG AAAAATATAT TATTTAGGGG CAGTCATCAG TCAGCTGGAA ACATTCTGGA
  AACCCTTCTT TTCTCCCAGA AGCCTTTGCA GAGTCTCTGT TCAGTAGAAT GGACCTGCTG
  R
  GCTCTCTGGT CGAGATAAAG AGGCAGAAAT AGCCTTGGAG AGGGCTTTCT GAAGGCTGTC
  TCAGTGGAGA CTTTTAGTAC TAAATTGTTC TCCTGAGTTG GTGAGATCTG TTGGCCCCTT
  CTGATATCTT TGGGTAATGC ACCTTGTAAC AGAAACCCAG GAAGCATCTC CAGGATGGTC
  TCTTTTGTCA GCCTTTGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45267309	mCV23733819	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147119835	ENSMUSSNP1210526	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33343826					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102491501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	1401 bp distal
Gm57687	predicted gene, 57687	within coordinates
Rr561715	regulatory region 561715	1865 bp distal
Rr561716	regulatory region 561716	1080 bp distal
Rr561717	regulatory region 561717	1141 bp proximal
Rr561718	regulatory region 561718	1716 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19110	transcription start site region 19110	1924 bp downstream