rs33344458 SNP Detail

Summary

• ID
  rs33344458
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7279732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAAGCAG TAGATCGTAT
  TGTGTTTGTT TTCACATACA CTTGATTTTA TTGGTCCTCC TCTCCTGCTT GCCTGCCCCC
  TCCTTTTGGT CCCCTTCTTC CCCCCAGTAG ACTCTCTGCA TGCTTTCCTG AAATGGGTTT
  CAGAGTTGGA AAGTTTGGAG AAGCAAAATC CAAGGGCATG AATTAAGAAA TTAATGATTG
  S
  TTAGGGATGT CTCTGATACT TCTCTATACT AGTTAAGGTA ACAACAAATG CACTATCTCC
  CATAGCAGAT AAATCATGAC ACAACTCAAA AACAAACAAA TGAACAAATG AAAACTCCTG
  GCAGTGGTGA CACATGCCTT TAATCCCAGC ACTCAGGAAG CAGAGGCAGG CAGATTTCTG
  AGTTCGAGGC TAGCCTGGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46802113	NES11004341	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33344458					SNP	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802113	NES11004341	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7279732 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	within coordinates
Rr689600	regulatory region 689600	1834 bp proximal
Tssr5584	transcription start site region 5584	746 bp upstream
Tssr162781	transcription start site region 162781	752 bp upstream
Tssr162782	transcription start site region 162782	721 bp upstream
Tssr162783	transcription start site region 162783	705 bp upstream