rs33344460 SNP Detail

Summary

• ID
  rs33344460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7280079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCACTCAG GAAGCAGAGG
  CAGGCAGATT TCTGAGTTCG AGGCTAGCCT GGTTCACAGA GCAAGTTACA GGACTATACA
  GAGAAACCCT GTCTCAAAAA AACAAAAAAA AAGTCAGGAA AAAAATGATA GAACTTCATT
  GGGGTACAAC AATAGATGTT TAATTCTTCC CCAGTAAAAC CACATTTAAT AGTCTTGCCT
  R
  CCAGTGGATG CCCCACTTTC TCTAGACCAC CTCAGTATTT CCCCCATTTA TAAAGCAGAA
  AGAAAAACAG ACTATTAAAA TGGCACAACC ATTGTCTGGG GGTGGGGGAG TCATGTAGTA
  ATTCTGGTGC TCCAGTAGTC ACCTGCATGA AAGCAGTGTG GTAAGCATCG ACAACCATAA
  TCTGTTGCTA AGCACCTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46802116	NES11004298	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33344460					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802116	NES11004298	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7280079 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	within coordinates
Rr689600	regulatory region 689600	1487 bp proximal
Tssr5584	transcription start site region 5584	1093 bp upstream
Tssr162781	transcription start site region 162781	1099 bp upstream
Tssr162782	transcription start site region 162782	1068 bp upstream
Tssr162783	transcription start site region 162783	1052 bp upstream