rs33344684 SNP Detail

Summary

• ID
  rs33344684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74111865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTC CTGCACGTCT GGCATTTAAA
  Y
  GCGCGCCGGG GGCGGCGGGA TGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39525020	mCV25305841	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145938499	ENSMUSSNP3480910	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss325449554	CHEV_17_74154210	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33344684					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74111865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	within coordinates
Ehd3	EH-domain containing 3	within coordinates
Rr530824	regulatory region 530824	19 bp distal
Rr530825	regulatory region 530825	209 bp distal
Rr530826	regulatory region 530826	1403 bp proximal
Tssr145810	transcription start site region 145810	31 bp downstream
Tssr145811	transcription start site region 145811	within coordinates
Tssr145812	transcription start site region 145812	13 bp upstream
Tssr145813	transcription start site region 145813	32 bp upstream
Tssr145814	transcription start site region 145814	75 bp upstream