rs33344748 SNP Detail

Summary

• ID
  rs33344748
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119145625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTGCCAGA CAGTAGGTCT GCAAAAATCA AAACAACAGA
  CAGTGTTGTG CTGGTCTTTG CATCCCAAAG CCAGCAACCA AGCCAGTGAC TATATGGCAG
  W
  TTTTAATATG GAGGCTCTCC AGCTGAAATG GGAGGACTCT TTTTAAGACA GACATTTCCA
  ATCCTTTGCA AACACGCCCT CCCTAGAGTT TGAAGCTAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45766868	mCV22835697	ABI	CRAMUS_MOUSE	f	SNP	A	A					T		A
ss51192407	NES13816993	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	T	T		T	A	T	T		T	T	T	T		T
ss149166989	ENSMUSSNP117273	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss321664024	CHEV_5_119457569	CHEVERUD	SCREENING_POP	f	SNP												T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33344748					SNP	A	A	A	A	T	T	T	T	A	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51192407	NES13816993	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119145625 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16442	CpG island 16442	1131 bp distal
Rr619043	regulatory region 619043	919 bp distal