rs33344887 SNP Detail

Summary

• ID
  rs33344887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7287424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTTAAA ATAATGAGAT
  CACAGGCCAC ATTTCAAGTG ACCAGTAAGT TCCAAACCGT TACAGTATAT AATATCTGAA
  GGAGACTTTA TGTTCTATGT CTCACTTGGG GTTAGTGACA GAGGCATGAG ACGCAAGCAT
  GATTGGCTTT CTTGTTGCTA AGCAACAGTG ATTTTTTTTC TTCCCCCCCA GAACAGGAAC
  Y
  GAGTGCAAAC AGGAAGTGCC ATGTTCCACC AAAGCTCCAC TGGCTCCCTC TAGTGGCCAT
  TTAGCAGTCA CAGACAAAGC TAGAGATAAG GTACTTGCTC AAATGCCAAG GCTGCAGGCA
  AGCTCAACCA TCCCCCCTGG ATATTAAGTT CAATGCCAAC AGGATTTCAG ATGCAGCAAT
  ACCAAAGCTA GAATGATTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46802167	NES11003990	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C		T	C	T	T		T
ss325887803	CHEV_X_6998311	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33344887					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802167	NES11003990	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7287424 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	within coordinates
Cpgi22567	CpG island 22567	1466 bp proximal
Tssr162784	transcription start site region 162784	100 bp upstream
Tssr162785	transcription start site region 162785	64 bp upstream
Tssr162786	transcription start site region 162786	53 bp upstream
Tssr162787	transcription start site region 162787	1745 bp downstream
Tssr162788	transcription start site region 162788	1764 bp downstream
Tssr162789	transcription start site region 162789	1792 bp downstream