rs33344890 SNP Detail

Summary

• ID
  rs33344890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7287501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAGACT TTATGTTCTA
  TGTCTCACTT GGGGTTAGTG ACAGAGGCAT GAGACGCAAG CATGATTGGC TTTCTTGTTG
  CTAAGCAACA GTGATTTTTT TTCTTCCCCC CCAGAACAGG AACCGAGTGC AAACAGGAAG
  TGCCATGTTC CACCAAAGCT CCACTGGCTC CCTCTAGTGG CCATTTAGCA GTCACAGACA
  R
  AGCTAGAGAT AAGGTACTTG CTCAAATGCC AAGGCTGCAG GCAAGCTCAA CCATCCCCCC
  TGGATATTAA GTTCAATGCC AACAGGATTT CAGATGCAGC AATACCAAAG CTAGAATGAT
  TCATCTCTTC CTCCTGAAAA CATGTCCTGA GAGCAGAACT GGCCCTAGAA AACATCTGGC
  TGCATAGAAG TATCAGAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46802170	NES11003991	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A		G	A	A	G		G
ss325887804	CHEV_X_6998388	CHEVERUD	SCREENING_POP	f	SNP									A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33344890					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802170	NES11003991	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7287501 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	within coordinates
Cpgi22567	CpG island 22567	1389 bp proximal
Rr689602	regulatory region 689602	198 bp distal
Rr689603	regulatory region 689603	within coordinates
Rr689604	regulatory region 689604	16 bp distal
Rr689605	regulatory region 689605	1250 bp proximal
Rr689606	regulatory region 689606	1735 bp proximal
Rr689607	regulatory region 689607	1908 bp proximal
Tssr162784	transcription start site region 162784	177 bp upstream
Tssr162785	transcription start site region 162785	141 bp upstream
Tssr162786	transcription start site region 162786	130 bp upstream
Tssr162787	transcription start site region 162787	1668 bp downstream
Tssr162788	transcription start site region 162788	1687 bp downstream
Tssr162789	transcription start site region 162789	1715 bp downstream