rs33344893 SNP Detail

Summary

• ID
  rs33344893
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7287569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTCTTGT TGCTAAGCAA
  CAGTGATTTT TTTTCTTCCC CCCCAGAACA GGAACCGAGT GCAAACAGGA AGTGCCATGT
  TCCACCAAAG CTCCACTGGC TCCCTCTAGT GGCCATTTAG CAGTCACAGA CAAAGCTAGA
  GATAAGGTAC TTGCTCAAAT GCCAAGGCTG CAGGCAAGCT CAACCATCCC CCCTGGATAT
  W
  AAGTTCAATG CCAACAGGAT TTCAGATGCA GCAATACCAA AGCTAGAATG ATTCATCTCT
  TCCTCCTGAA AACATGTCCT GAGAGCAGAA CTGGCCCTAG AAAACATCTG GCTGCATAGA
  AGTATCAGAA TGGAGACACT GACTGTGGAA GAGAGAAAGA CCTCTCTCTG GAAAGGGAGG
  GAGTCAGAAG CCCTATGGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46802173	NES11003992	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T		A	T	T	A		A
ss325887805	CHEV_X_6998456	CHEVERUD	SCREENING_POP	f	SNP										T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33344893					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802173	NES11003992	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7287569 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	within coordinates
Cpgi22567	CpG island 22567	1321 bp proximal
Rr689602	regulatory region 689602	266 bp distal
Rr689603	regulatory region 689603	within coordinates
Rr689604	regulatory region 689604	84 bp distal
Rr689605	regulatory region 689605	1182 bp proximal
Rr689606	regulatory region 689606	1667 bp proximal
Rr689607	regulatory region 689607	1840 bp proximal
Rr689608	regulatory region 689608	1957 bp proximal
Tssr162784	transcription start site region 162784	245 bp upstream
Tssr162785	transcription start site region 162785	209 bp upstream
Tssr162786	transcription start site region 162786	198 bp upstream
Tssr162787	transcription start site region 162787	1600 bp downstream
Tssr162788	transcription start site region 162788	1619 bp downstream
Tssr162789	transcription start site region 162789	1647 bp downstream