rs33345025 SNP Detail

Summary

• ID
  rs33345025
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24828128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTTACTGC CTTCTGAGTT TCCTTCTCCC CTCCCCACAC
  AGTGGCCATT CCCTCCTGGG AAGAGTAGAG AGGCCTCAGA CTTGGGGCAA GAGAATACAG
  W
  ATCATAGATG GGGCGGGGCA GGTTTGAGAG TGGTCCAGGA ACATGCAGAG CATACAGGTG
  GAAGATGGAG TGGGACCCAG GCTGAGGATG CTGAGGTGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45766975	mCV23725021	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss148097903	ENSMUSSNP2059583	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33345025					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24828128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15616	CpG island 15616	785 bp proximal
Gm71653	predicted gene, 71653	within coordinates
Rr608375	regulatory region 608375	within coordinates
Rr608376	regulatory region 608376	1271 bp proximal
Smarcd3	SWI/SNF related BAF chromatin remodeling complex subunit D3	within coordinates
Tssr50355	transcription start site region 50355	477 bp upstream
Tssr50356	transcription start site region 50356	450 bp upstream
Tssr50357	transcription start site region 50357	342 bp downstream
Tssr50358	transcription start site region 50358	1267 bp downstream