rs33345055 SNP Detail

Summary

• ID
  rs33345055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100318906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAATTGA CACAGAGAAG
  CAAGTTACAC ACAGGGCTGG CTGAGGAGTA AGTACTGTTA ACATGGATGA ATTGTGTTGG
  CACAGATTGT GAGAACGGAG TGTGTCGTTA GTGATTTGTT TTATTTACTA AATAACCCAC
  CAGCTGATGG CTAGCAGATG GTTTCTCAGT CAAACTATTG AACGAATGAA ACTCACTCAG
  Y
  TCTGTGGACT CAGATGTGAC TTAGTGGCAT TACAGTAGCT GATGTGACTT GAATTATAGC
  CCATTGCATT TGTGGTTATA TGTGGCCATG TCACATCATG CAAAATAGAA GCATCTTGGG
  CATGTGAAAT GAGTGTGTGT GCGTGTGTGT GCCAGTAATA TCCACTACAC ACAGTTGCTT
  GGAGCAACAG TGCCCACCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46802559	NES10738376	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33345055					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802559	NES10738376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100318906 () rs orientation: forward

Symbol	Name	Function Class
Gm12464	predicted gene 12464	1970 bp upstream