rs33345273 SNP Detail

Summary

• ID
  rs33345273
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136190723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGTGCAAA AACTCGAGTT TGTGGTTTTG TGTTTTAAGA
  TATATTATGT TTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  S
  TGTGTGTGTG TGTGTGTGTG TGTATGTGTG TATGCATGCC AGTGTAAGTG TATGTGCACA
  TGTGCACATA AGCCTGCACA TATGCAGAGG CCAGAAGAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45767829	mCV25029025	ABI	CRAMUS_MOUSE	f	SNP	G	G
ss321699069	CHEV_5_136637739	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs33345273					SNP	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136190723 () rs orientation: forward

Symbol	Name	Function Class
D5Mit341	DNA segment, Chr 5, Massachusetts Institute of Technology 341	within coordinates
Orai2	ORAI calcium release-activated calcium modulator 2	within coordinates
Tssr53792	transcription start site region 53792	1098 bp upstream
Tssr53793	transcription start site region 53793	906 bp upstream
Tssr53794	transcription start site region 53794	642 bp upstream
Tssr53795	transcription start site region 53795	588 bp upstream
Tssr53796	transcription start site region 53796	559 bp upstream
Tssr53797	transcription start site region 53797	509 bp upstream
Tssr53798	transcription start site region 53798	477 bp upstream
Tssr53799	transcription start site region 53799	462 bp upstream
Tssr53800	transcription start site region 53800	408 bp upstream
Tssr53801	transcription start site region 53801	153 bp downstream
Tssr53802	transcription start site region 53802	189 bp downstream