rs33345518 SNP Detail

Summary

• ID
  rs33345518
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142908081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCAA AGCCCAGTGA CCTGAGTTTT
  K
  TGGCCCCAGG GTATACAGAA TGGAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss45767183	mCV23734250	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss144594096	ENSMUSSNP1665349	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs33345518					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142908081 () rs orientation: forward

Symbol	Name	Function Class
Gm72722	predicted gene, 72722	1021 bp downstream
Rr368006	regulatory region 368006	1339 bp downstream
Rr624054	regulatory region 624054	1310 bp distal
Rr624055	regulatory region 624055	577 bp distal
Rr624056	regulatory region 624056	within coordinates
Rr624057	regulatory region 624057	1211 bp proximal
Tssr49610	transcription start site region 49610	1315 bp downstream