rs33345676 SNP Detail

Summary

• ID
  rs33345676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7287642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATGTTCC ACCAAAGCTC
  CACTGGCTCC CTCTAGTGGC CATTTAGCAG TCACAGACAA AGCTAGAGAT AAGGTACTTG
  CTCAAATGCC AAGGCTGCAG GCAAGCTCAA CCATCCCCCC TGGATATTAA GTTCAATGCC
  AACAGGATTT CAGATGCAGC AATACCAAAG CTAGAATGAT TCATCTCTTC CTCCTGAAAA
  Y
  ATGTCCTGAG AGCAGAACTG GCCCTAGAAA ACATCTGGCT GCATAGAAGT ATCAGAATGG
  AGACACTGAC TGTGGAAGAG AGAAAGACCT CTCTCTGGAA AGGGAGGGAG TCAGAAGCCC
  TATGGGAAAC TGTAGATTAT AAGACTGGGG CTGCCTCTAG ATTTCCCTTA GTTAACAAGA
  CACCAAAACA ACACTCCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46802176	NES11003993	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33345676					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802176	NES11003993	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7287642 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	within coordinates
Cpgi22567	CpG island 22567	1248 bp proximal
Tssr162784	transcription start site region 162784	318 bp upstream
Tssr162785	transcription start site region 162785	282 bp upstream
Tssr162786	transcription start site region 162786	271 bp upstream
Tssr162787	transcription start site region 162787	1527 bp downstream
Tssr162788	transcription start site region 162788	1546 bp downstream
Tssr162789	transcription start site region 162789	1574 bp downstream