rs33345679 SNP Detail

Summary

• ID
  rs33345679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7287681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTTAGCA GTCACAGACA
  AAGCTAGAGA TAAGGTACTT GCTCAAATGC CAAGGCTGCA GGCAAGCTCA ACCATCCCCC
  CTGGATATTA AGTTCAATGC CAACAGGATT TCAGATGCAG CAATACCAAA GCTAGAATGA
  TTCATCTCTT CCTCCTGAAA ACATGTCCTG AGAGCAGAAC TGGCCCTAGA AAACATCTGG
  Y
  TGCATAGAAG TATCAGAATG GAGACACTGA CTGTGGAAGA GAGAAAGACC TCTCTCTGGA
  AAGGGAGGGA GTCAGAAGCC CTATGGGAAA CTGTAGATTA TAAGACTGGG GCTGCCTCTA
  GATTTCCCTT AGTTAACAAG ACACCAAAAC AACACTCCTT AGGCTTCTCT TGAGATTAGG
  GGCCTGAAAT GTCAATAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46802179	NES11003994	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33345679					SNP	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802179	NES11003994	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7287681 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	within coordinates
Cpgi22567	CpG island 22567	1209 bp proximal
Tssr162784	transcription start site region 162784	357 bp upstream
Tssr162785	transcription start site region 162785	321 bp upstream
Tssr162786	transcription start site region 162786	310 bp upstream
Tssr162787	transcription start site region 162787	1488 bp downstream
Tssr162788	transcription start site region 162788	1507 bp downstream
Tssr162789	transcription start site region 162789	1535 bp downstream