rs33345682 SNP Detail

Summary

• ID
  rs33345682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7287890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATCAGAA TGGAGACACT
  GACTGTGGAA GAGAGAAAGA CCTCTCTCTG GAAAGGGAGG GAGTCAGAAG CCCTATGGGA
  AACTGTAGAT TATAAGACTG GGGCTGCCTC TAGATTTCCC TTAGTTAACA AGACACCAAA
  ACAACACTCC TTAGGCTTCT CTTGAGATTA GGGGCCTGAA ATGTCAATAA AAATATACAC
  R
  TTCAAGGCAA TGACCAACTT AGTTTGTTCA TGAGGCACTG AGCTACGTAA TACAATGGTA
  AATTAGACAG CATGATCCAT ACTCCAGTGG AGACCCTAGT CCAAAAACAA CCCTCCCATT
  TGTTAACACA TTACCTACCC AGAAAATAGC TTAAATGTAA CCTAACCAAA AATTAGGCAG
  CTCTAGATTC CCAGGTGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46802182	NES11003995	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33345682					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802182	NES11003995	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7287890 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	within coordinates
Cpgi22567	CpG island 22567	1000 bp proximal
Rr689602	regulatory region 689602	587 bp distal
Rr689603	regulatory region 689603	137 bp distal
Rr689604	regulatory region 689604	405 bp distal
Rr689605	regulatory region 689605	861 bp proximal
Rr689606	regulatory region 689606	1346 bp proximal
Rr689607	regulatory region 689607	1519 bp proximal
Rr689608	regulatory region 689608	1636 bp proximal
Tssr162784	transcription start site region 162784	566 bp upstream
Tssr162785	transcription start site region 162785	530 bp upstream
Tssr162786	transcription start site region 162786	519 bp upstream
Tssr162787	transcription start site region 162787	1279 bp downstream
Tssr162788	transcription start site region 162788	1298 bp downstream
Tssr162789	transcription start site region 162789	1326 bp downstream