rs33346645 SNP Detail

Summary

• ID
  rs33346645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71062098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAAGTGTC CCCGGTTGGA CACGACGGGT TTAGTGGGGA
  CTTGCTGGAG ATTGCGCACA GGTGGGTCGT CAGCACCCGG TGGCGCAGTC ATGAGCTCAG
  R
  TTTCCTGTGT GAGTGTGACA GCATGCAGGT CACCACGGCG CTAAGTCTCG CGTGGTGTCC
  CTGGTGCAGG CAGATCCCCT AGCCCGGGCC TCCCCGCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss46265087	mCV22785573	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss145127928	ENSMUSSNP420669	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs33346645					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71062098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20475	CpG island 20475	681 bp distal
Cpgi20476	CpG island 20476	within coordinates
Cpgi20477	CpG island 20477	1464 bp proximal
Gm45546	predicted gene 45546	977 bp upstream
Gm63790	predicted gene, 63790	945 bp upstream
Rr400904	regulatory region 400904	1396 bp upstream
Rr664832	regulatory region 664832	1145 bp distal
Rr664833	regulatory region 664833	644 bp distal
Rr664834	regulatory region 664834	996 bp distal
Rr664835	regulatory region 664835	86 bp distal
Rr664836	regulatory region 664836	455 bp proximal
Rr664837	regulatory region 664837	956 bp proximal
Rr664838	regulatory region 664838	1481 bp proximal
Ssbp4	single stranded DNA binding protein 4	1014 bp upstream
Tssr77777	transcription start site region 77777	942 bp upstream
Tssr77778	transcription start site region 77778	1251 bp upstream
Tssr81636	transcription start site region 81636	1118 bp upstream