rs33346685 SNP Detail

Summary

• ID
  rs33346685
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3673632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACTCTCA AGGAGCTTGT
  GTCTGGGGCT GGGGGCTGCT GTTCCTGCGG AAGCTGAGTG CAGCAGGATC CTGAGGGGTG
  AGCAGGGGTT GAGGGCTGAG GGTCCCAGGT CGTTTCTGCA TTCCATCCTG GGGATGAAGA
  AGGGTCAGAC GGAGGGAGGG GACCAAGGAA AGTGCAAGTC AGAAGTGCCT CCAAACAATG
  K
  TTTTTTTTCG TCTGCTAATT AGGGTGGTGG TATTTGGTCA GACATTGGCC TGTTAGTGTA
  TACCTGTAAT CCCAGTACTC AAGAAACAGG CAGGAGGATT ATTTTGAGTT CAAAGCTAAA
  TACTAAAACA AACAAACAAA CAGTTGAGTT GAGAAGATAG CTCAGTCATT GAAATCCTTG
  CTATGCTCAT TTGAAGACCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46264642	mCV22852525	ABI	CRAMUS_MOUSE	f	SNP		G						T		T
ss61076610	NES16054590	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T		G	T	T	T	T	T	G	G
ss148547069	ENSMUSSNP3903983	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33346685					SNP	G	G	T	T	T	T	T	T	G	T	T	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076610	NES16054590	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3673632 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20029	CpG island 20029	1913 bp distal
Pcp2	Purkinje cell protein 2 (L7)	within coordinates
Pet100	PET100 homolog	within coordinates
Rr658951	regulatory region 658951	622 bp distal
Tssr80203	transcription start site region 80203	75 bp upstream
Tssr80204	transcription start site region 80204	937 bp downstream
Tssr80205	transcription start site region 80205	1027 bp downstream
Tssr80206	transcription start site region 80206	1289 bp downstream
Tssr80207	transcription start site region 80207	1338 bp downstream
Tssr80208	transcription start site region 80208	1357 bp downstream
Tssr80209	transcription start site region 80209	1393 bp downstream
Tssr80210	transcription start site region 80210	1574 bp downstream
Tssr80211	transcription start site region 80211	1614 bp downstream
Tssr80212	transcription start site region 80212	1642 bp downstream
Tssr80213	transcription start site region 80213	1657 bp downstream
Tssr80214	transcription start site region 80214	1909 bp downstream
Tssr80215	transcription start site region 80215	1946 bp downstream