rs33347113 SNP Detail

Summary

• ID
  rs33347113
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88748641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCCCCTGC GCGGGGGTGT
  ACCCGGCGCG CGGCTCCGGC AGAGCGTGGG CTGCCCCGGG GGTGTGGAAC CGAGGCGAGC
  ACGGGTCCCC GGGAGTGAGG AGTTAGGAGT TTTCTCCCGA GGTAATGACC GTACCGGAGG
  GGGCGTCGCG CAGTCGGAGC CACAGAGGGC AGAGGACGCC CAGGCGGAAA CCTGCGACCC
  S
  GGGAGTTGCT GCTCTAAGAG TCCCGGGGAG CCCGCGCCAG CCACGTCGCC GCTCCGGCTC
  CCATCCGAGC GGGACGCGCG CGGCGTGGAG TCCCAGTCCG GGGCCCGGCC CGGCCCGGGC
  GGGATGGCTG GGCCCGGAGA AGTAGTGCCC AGGAGGACTC GCGTAAACTT CGGGCGCGGG
  GCCCCGATGT GGGGTGGCGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39525152	mCV24691987	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33347113					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88748641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9640	CpG island 9640	within coordinates
Foxn2	forkhead box N2	within coordinates
Rr340320	regulatory region 340320	within coordinates
Rr405533	regulatory region 405533	549 bp downstream
Tssr146228	transcription start site region 146228	472 bp downstream
Tssr146229	transcription start site region 146229	426 bp downstream
Tssr146230	transcription start site region 146230	122 bp downstream
Tssr146231	transcription start site region 146231	311 bp upstream
Tssr149806	transcription start site region 149806	607 bp downstream