rs33347228 SNP Detail

Summary

• ID
  rs33347228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74534060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA TTTTTATTGG ATATTCAAAC
  R
  AGAGGGGGAA GATGACTGTG TAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45267604	mCV23154345	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss146763744	ENSMUSSNP590142	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33347228					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74534060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11800	CpG island 11800	290 bp proximal
Gm38462	predicted gene, 38462	within coordinates
Gm75671	predicted gene, 75671	278 bp downstream
Hoxd8	homeobox D8	913 bp upstream
Igs15	intergenic site 15	within coordinates
Rr44607	regulatory region 44607	1060 bp distal
Rr559361	regulatory region 559361	669 bp distal
Rr559362	regulatory region 559362	1304 bp distal
Rr559363	regulatory region 559363	within coordinates
Rr559364	regulatory region 559364	534 bp proximal
Rr559365	regulatory region 559365	910 bp proximal
Rr559366	regulatory region 559366	1014 bp proximal
Rr559367	regulatory region 559367	1031 bp proximal
Tssr18420	transcription start site region 18420	816 bp upstream
Tssr18421	transcription start site region 18421	907 bp upstream
Tssr18422	transcription start site region 18422	1109 bp upstream
Tssr18423	transcription start site region 18423	1145 bp upstream
Tssr18424	transcription start site region 18424	1201 bp upstream
Tssr18425	transcription start site region 18425	1330 bp upstream
Tssr18426	transcription start site region 18426	1370 bp upstream
Tssr18427	transcription start site region 18427	1429 bp upstream
Tssr18428	transcription start site region 18428	1462 bp upstream
Tssr18429	transcription start site region 18429	1624 bp upstream