rs33347274 SNP Detail

Summary

• ID
  rs33347274
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7288266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGCTCTA GATTCCCAGG
  TGTGCCTGGG CCATACATCT CTCAAGCCTA CTGTTGTTGG GAGAGCTGGA TCTGGGAAAG
  GAAGACAAGA TCTGAAGTAC TCATGGTTCC CTGCCTTACC CAAGCATTTC TCAACAGTCC
  TTGTAATTTT TTCAGAAATC CTTCCATTCA GAGTCCTGCC TCCCTCGGAT GGAAACCCAA
  R
  CTTAGCCTAG GGGAAGGACT ATGCCCTAGT AGGTTCTACT GATTGGATGC TCTTCCATAC
  AACTTTGGCT CATGAGGAAA ACAAGAACTG CCTGGCAGAA GCCATGCCCC ATGGATGTGA
  TAGACCATGA CCAAGGGACA GTAAGGATTA GAATCAACTA AGATTTATTT ATCTTATGTG
  TTTGAGTGTT TAGCTCACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46802194	NES11003948	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33347274					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802194	NES11003948	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7288266 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	within coordinates
Cpgi22567	CpG island 22567	624 bp proximal
Tssr162784	transcription start site region 162784	942 bp upstream
Tssr162785	transcription start site region 162785	906 bp upstream
Tssr162786	transcription start site region 162786	895 bp upstream
Tssr162787	transcription start site region 162787	903 bp downstream
Tssr162788	transcription start site region 162788	922 bp downstream
Tssr162789	transcription start site region 162789	950 bp downstream