rs33347282 SNP Detail

Summary

• ID
  rs33347282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7289343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAATCAT CCGGCCCACT
  AAGGTCCAAA CTTGGAGGAA GCTCGAGTCT CTGCTTATTA ACACGTGTCG CGGCACGGCT
  GACTTGTGCG TCACCAACCA CAAGGTGGCG AAAGAGATTA TCACATCAAA CCAGCCTGCC
  TTCTGCCTCT TCTATACCAT TATTTTGCTA AGCAGAAGCA TTTCCTGAGC GTGAGTCATT
  Y
  AATGAGCACA GTGGTCCTAT GGATTGTGGC CCTATGGATT AGCTATGATT TCACAGATGA
  GCAAACCAAG AGCTGCAGAT ACCTGTGGAG TTTGGCTGTT ACCTATTTTT AGTACTGCAT
  CTGCATTTAC ACCAGCGTCA CCACACACAT ATGAGTACTG TAGTGTTACT TATTTGGCAA
  TTGCTCTGCC ATCTTTTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46802203	NES11003888	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C		C	T	C	C		T
ss325887809	CHEV_X_7000230	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33347282					SNP	C	C	T	C	C	C	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802203	NES11003888	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7289343 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	116 bp upstream
Cpgi22567	CpG island 22567	224 bp distal
DXImx8	DNA segment, Chr X, Immunex 8	1705 bp proximal
Tssr162785	transcription start site region 162785	1983 bp upstream
Tssr162786	transcription start site region 162786	1972 bp upstream
Tssr162787	transcription start site region 162787	163 bp upstream
Tssr162788	transcription start site region 162788	130 bp upstream
Tssr162789	transcription start site region 162789	108 bp upstream