rs33347714 SNP Detail

Summary

• ID
  rs33347714
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117232498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAT GCCTGCCTGG CAGCTCAGTC
  S
  TGTCAGACTA GAAGAACAGC CAGGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss45767951	mCV23796471	ABI	CRAMUS_MOUSE	f	SNP		G	G		C	C
ss51186332	NES13827113	PERLEGEN	MM_PANEL2	f	SNP	G		G	G		C	C		G	C	G
ss149148118	ENSMUSSNP6915902	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			C
ss321658426	CHEV_5_117544442	CHEVERUD	SCREENING_POP	f	SNP								G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs33347714					SNP	G	G	G	G	C	C	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51186332	NES13827113	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117232498 () rs orientation: forward

Symbol	Name	Function Class
Rr618554	regulatory region 618554	within coordinates
Rr618555	regulatory region 618555	170 bp proximal
Rr618556	regulatory region 618556	1964 bp proximal
Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	Intron