rs33348178 SNP Detail

Summary

• ID
  rs33348178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7289583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTATGAT TTCACAGATG
  AGCAAACCAA GAGCTGCAGA TACCTGTGGA GTTTGGCTGT TACCTATTTT TAGTACTGCA
  TCTGCATTTA CACCAGCGTC ACCACACACA TATGAGTACT GTAGTGTTAC TTATTTGGCA
  ATTGCTCTGC CATCTTTTGG CAATAAGAAT TTATTTCATC CTCATCACAG TCTTACAGGA
  Y
  CACCATCATA TATGTGGTCT GTTGATCAAA CATCATCATA CAACACATGA CTATATGTTT
  CTATATGTTA TCTATGTTTT TACTTAAAGG TTTTTTATTA TGAAAGAAAC TGTATTCCTG
  GTAACAACTT TCAAATTATA ATAATGAGTA AAAAGTCTCC TTTCTTCCCA TTAGAACTAG
  TCAAAAGCGT AACTCCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46802209	NES11003891	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T		C	C	C	C		C
ss325887810	CHEV_X_7000470	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33348178					SNP	T	T	C	T	T	T	T	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46802209	NES11003891	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7289583 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	356 bp upstream
Cpgi22567	CpG island 22567	464 bp distal
DXImx8	DNA segment, Chr X, Immunex 8	1465 bp proximal
Rr689603	regulatory region 689603	1830 bp distal
Rr689605	regulatory region 689605	175 bp distal
Rr689606	regulatory region 689606	326 bp distal
Rr689607	regulatory region 689607	40 bp distal
Rr689608	regulatory region 689608	36 bp distal
Tssr162787	transcription start site region 162787	403 bp upstream
Tssr162788	transcription start site region 162788	370 bp upstream
Tssr162789	transcription start site region 162789	348 bp upstream