rs33348319 SNP Detail

Summary

• ID
  rs33348319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:112063355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCAATTT CTGCCTGCTT
  TGAGGGAAAG AGAGTCCACC CATGCCTTCC GCCGAGACAT AGAAACAAGA TAAACAACAC
  AGAAACGACA AACAGGTCAA AGGGAAAGCA CAGATAGATG GTAGAAAGAA AAAAAAAGGG
  GGAGGGGGCA GCAGAAGCAG AAAGCCCCAA CAGCCAGACA CAAAGGGCTT GTGATGCTCA
  Y
  GTCGGAAGAC TTGGCTCTTT ACCTGAAGGA ACAGTGGAGT GACCCAGCGT CCCGGGTGCC
  TTGACTGACT GGATTTCGTT TGGGGCTTTT GTGAGTAATT ATTGTTTCTC AGTGAATGCT
  TTGGTTGGGT CAGTTTGGTT TGTGGCTTGC CTTTGTTGTT TGGTCGATTT ATTTTAACTG
  CTAGCAAAAG GAGCCCTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47787445	NES11997220	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33348319					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787445	NES11997220	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112063355 () rs orientation: forward

Symbol	Name	Function Class
2900079G21Rik	RIKEN cDNA 2900079G21 gene	within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21	within coordinates
Cpgi22409	CpG island 22409	58 bp proximal
Gm68368	predicted gene, 68368	738 bp downstream
Rr687419	regulatory region 687419	1797 bp distal
Rr687420	regulatory region 687420	1296 bp distal
Rr687421	regulatory region 687421	within coordinates
Rr687422	regulatory region 687422	47 bp proximal
Rr687423	regulatory region 687423	721 bp proximal
Tssr87517	transcription start site region 87517	36 bp downstream
Tssr87518	transcription start site region 87518	within coordinates
Tssr91795	transcription start site region 91795	1901 bp upstream
Tssr91796	transcription start site region 91796	1865 bp upstream
Tssr91797	transcription start site region 91797	1827 bp upstream
Tssr91798	transcription start site region 91798	1159 bp upstream
Tssr91799	transcription start site region 91799	1033 bp upstream
Tssr91800	transcription start site region 91800	1018 bp upstream
Tssr91801	transcription start site region 91801	1001 bp upstream
Tssr91802	transcription start site region 91802	964 bp upstream
Tssr91803	transcription start site region 91803	875 bp upstream
Tssr91804	transcription start site region 91804	717 bp upstream
Tssr91805	transcription start site region 91805	304 bp downstream
Tssr91806	transcription start site region 91806	340 bp downstream
Tssr91807	transcription start site region 91807	521 bp downstream
Tssr91808	transcription start site region 91808	543 bp downstream
Tssr91809	transcription start site region 91809	597 bp downstream
Tssr91810	transcription start site region 91810	669 bp downstream
Tssr91811	transcription start site region 91811	855 bp downstream
Tssr91812	transcription start site region 91812	1165 bp downstream
Tssr91813	transcription start site region 91813	1224 bp downstream
Tssr91814	transcription start site region 91814	1543 bp downstream
Tssr91815	transcription start site region 91815	1567 bp downstream
Tssr91816	transcription start site region 91816	1602 bp downstream
Tssr91817	transcription start site region 91817	1613 bp downstream
Tssr91818	transcription start site region 91818	1632 bp downstream
Tssr91819	transcription start site region 91819	1653 bp downstream
Tssr91820	transcription start site region 91820	1679 bp downstream