rs33348321 SNP Detail

Summary

• ID
  rs33348321
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:112063358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAGCACAG ATAGATGGTA GAAAGAAAAA AAAAGGGGGA
  GGGGGCAGCA GAAGCAGAAA GCCCCAACAG CCAGACACAA AGGGCTTGTG ATGCTCATGT
  S
  GGAAGACTTG GCTCTTTACC TGAAGGAACA GTGGAGTGAC CCAGCGTCCC GGGTGCCTTG
  ACTGACTGGA TTTCGTTTGG GGCTTTTGTG AGTAATTATT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47787447	NES11997221	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33348321					SNP	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787447	NES11997221	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112063358 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2900079G21Rik	RIKEN cDNA 2900079G21 gene			within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21			Intron
				Noncoding-Transcript-Variant
Gm68368	predicted gene, 68368			735 bp downstream
Rr687419	regulatory region 687419			1800 bp distal
Rr687420	regulatory region 687420			1299 bp distal
Rr687421	regulatory region 687421			within coordinates
Rr687422	regulatory region 687422			44 bp proximal
Rr687423	regulatory region 687423			718 bp proximal
Tssr87517	transcription start site region 87517			39 bp downstream
Tssr87518	transcription start site region 87518			within coordinates
Tssr91795	transcription start site region 91795			1904 bp upstream
Tssr91796	transcription start site region 91796			1868 bp upstream
Tssr91797	transcription start site region 91797			1830 bp upstream
Tssr91798	transcription start site region 91798			1162 bp upstream
Tssr91799	transcription start site region 91799			1036 bp upstream
Tssr91800	transcription start site region 91800			1021 bp upstream
Tssr91801	transcription start site region 91801			1004 bp upstream
Tssr91802	transcription start site region 91802			967 bp upstream
Tssr91803	transcription start site region 91803			878 bp upstream
Tssr91804	transcription start site region 91804			720 bp upstream
Tssr91805	transcription start site region 91805			301 bp downstream
Tssr91806	transcription start site region 91806			337 bp downstream
Tssr91807	transcription start site region 91807			518 bp downstream
Tssr91808	transcription start site region 91808			540 bp downstream
Tssr91809	transcription start site region 91809			594 bp downstream
Tssr91810	transcription start site region 91810			666 bp downstream
Tssr91811	transcription start site region 91811			852 bp downstream
Tssr91812	transcription start site region 91812			1162 bp downstream
Tssr91813	transcription start site region 91813			1221 bp downstream
Tssr91814	transcription start site region 91814			1540 bp downstream
Tssr91815	transcription start site region 91815			1564 bp downstream
Tssr91816	transcription start site region 91816			1599 bp downstream
Tssr91817	transcription start site region 91817			1610 bp downstream
Tssr91818	transcription start site region 91818			1629 bp downstream
Tssr91819	transcription start site region 91819			1650 bp downstream
Tssr91820	transcription start site region 91820			1676 bp downstream