rs33348321 SNP Detail

Summary

• ID
  rs33348321
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:112063358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAGCACAG ATAGATGGTA GAAAGAAAAA AAAAGGGGGA
  GGGGGCAGCA GAAGCAGAAA GCCCCAACAG CCAGACACAA AGGGCTTGTG ATGCTCATGT
  S
  GGAAGACTTG GCTCTTTACC TGAAGGAACA GTGGAGTGAC CCAGCGTCCC GGGTGCCTTG
  ACTGACTGGA TTTCGTTTGG GGCTTTTGTG AGTAATTATT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47787447	NES11997221	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33348321					SNP	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47787447	NES11997221	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112063358 () rs orientation: forward

Symbol	Name	Function Class
2900079G21Rik	RIKEN cDNA 2900079G21 gene	within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21	within coordinates
Cpgi22409	CpG island 22409	55 bp proximal
Gm68368	predicted gene, 68368	735 bp downstream
Rr687419	regulatory region 687419	1800 bp distal
Rr687420	regulatory region 687420	1299 bp distal
Rr687421	regulatory region 687421	within coordinates
Rr687422	regulatory region 687422	44 bp proximal
Rr687423	regulatory region 687423	718 bp proximal
Tssr87517	transcription start site region 87517	39 bp downstream
Tssr87518	transcription start site region 87518	within coordinates
Tssr91795	transcription start site region 91795	1904 bp upstream
Tssr91796	transcription start site region 91796	1868 bp upstream
Tssr91797	transcription start site region 91797	1830 bp upstream
Tssr91798	transcription start site region 91798	1162 bp upstream
Tssr91799	transcription start site region 91799	1036 bp upstream
Tssr91800	transcription start site region 91800	1021 bp upstream
Tssr91801	transcription start site region 91801	1004 bp upstream
Tssr91802	transcription start site region 91802	967 bp upstream
Tssr91803	transcription start site region 91803	878 bp upstream
Tssr91804	transcription start site region 91804	720 bp upstream
Tssr91805	transcription start site region 91805	301 bp downstream
Tssr91806	transcription start site region 91806	337 bp downstream
Tssr91807	transcription start site region 91807	518 bp downstream
Tssr91808	transcription start site region 91808	540 bp downstream
Tssr91809	transcription start site region 91809	594 bp downstream
Tssr91810	transcription start site region 91810	666 bp downstream
Tssr91811	transcription start site region 91811	852 bp downstream
Tssr91812	transcription start site region 91812	1162 bp downstream
Tssr91813	transcription start site region 91813	1221 bp downstream
Tssr91814	transcription start site region 91814	1540 bp downstream
Tssr91815	transcription start site region 91815	1564 bp downstream
Tssr91816	transcription start site region 91816	1599 bp downstream
Tssr91817	transcription start site region 91817	1610 bp downstream
Tssr91818	transcription start site region 91818	1629 bp downstream
Tssr91819	transcription start site region 91819	1650 bp downstream
Tssr91820	transcription start site region 91820	1676 bp downstream